A field-to-desktop toolchain for X-ray CT densitometry enables tree ring analysis.
Identifieur interne : 000017 ( Main/Exploration ); précédent : 000016; suivant : 000018A field-to-desktop toolchain for X-ray CT densitometry enables tree ring analysis.
Auteurs : Tom De Mil [Belgique] ; Astrid Vannoppen [Belgique] ; Hans Beeckman [Belgique] ; Joris Van Acker [Belgique] ; Jan Van Den Bulcke [Belgique]Source :
- Annals of botany [ 1095-8290 ] ; 2016.
Abstract
Disentangling tree growth requires more than ring width data only. Densitometry is considered a valuable proxy, yet laborious wood sample preparation and lack of dedicated software limit the widespread use of density profiling for tree ring analysis. An X-ray computed tomography-based toolchain of tree increment cores is presented, which results in profile data sets suitable for visual exploration as well as density-based pattern matching.
DOI: 10.1093/aob/mcw063
PubMed: 27107414
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000004
- to stream PubMed, to step Curation: 000004
- to stream PubMed, to step Checkpoint: 000004
- to stream Ncbi, to step Merge: 00320
- to stream Ncbi, to step Curation: 000320
- to stream Ncbi, to step Checkpoint: 000320
- to stream Main, to step Merge: 000017
- to stream Main, to step Curation: 000017
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A field-to-desktop toolchain for X-ray CT densitometry enables tree ring analysis.</title><author><name sortKey="De Mil, Tom" sort="De Mil, Tom" uniqKey="De Mil T" first="Tom" last="De Mil">Tom De Mil</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren, Belgium tom.demil@ugent.be.</nlm:affiliation><country wicri:rule="url">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author><author><name sortKey="Vannoppen, Astrid" sort="Vannoppen, Astrid" uniqKey="Vannoppen A" first="Astrid" last="Vannoppen">Astrid Vannoppen</name><affiliation wicri:level="1"><nlm:affiliation>University of Leuven, Division Forest, Nature and Landscape, Department of Earth and Environmental Sciences, Celestijnenlaan 200E, Box 2411, B-3001 Leuven, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>University of Leuven, Division Forest, Nature and Landscape, Department of Earth and Environmental Sciences, Celestijnenlaan 200E, Box 2411, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Beeckman, Hans" sort="Beeckman, Hans" uniqKey="Beeckman H" first="Hans" last="Beeckman">Hans Beeckman</name><affiliation wicri:level="1"><nlm:affiliation>Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren</wicri:regionArea><wicri:noRegion>B-3080 Tervuren</wicri:noRegion></affiliation></author><author><name sortKey="Van Acker, Joris" sort="Van Acker, Joris" uniqKey="Van Acker J" first="Joris" last="Van Acker">Joris Van Acker</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author><author><name sortKey="Van Den Bulcke, Jan" sort="Van Den Bulcke, Jan" uniqKey="Van Den Bulcke J" first="Jan" last="Van Den Bulcke">Jan Van Den Bulcke</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:27107414</idno><idno type="pmid">27107414</idno><idno type="doi">10.1093/aob/mcw063</idno><idno type="wicri:Area/PubMed/Corpus">000004</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000004</idno><idno type="wicri:Area/PubMed/Curation">000004</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000004</idno><idno type="wicri:Area/PubMed/Checkpoint">000004</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000004</idno><idno type="wicri:Area/Ncbi/Merge">00320</idno><idno type="wicri:Area/Ncbi/Curation">000320</idno><idno type="wicri:Area/Ncbi/Checkpoint">000320</idno><idno type="wicri:Area/Main/Merge">000017</idno><idno type="wicri:Area/Main/Curation">000017</idno><idno type="wicri:Area/Main/Exploration">000017</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">A field-to-desktop toolchain for X-ray CT densitometry enables tree ring analysis.</title><author><name sortKey="De Mil, Tom" sort="De Mil, Tom" uniqKey="De Mil T" first="Tom" last="De Mil">Tom De Mil</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren, Belgium tom.demil@ugent.be.</nlm:affiliation><country wicri:rule="url">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author><author><name sortKey="Vannoppen, Astrid" sort="Vannoppen, Astrid" uniqKey="Vannoppen A" first="Astrid" last="Vannoppen">Astrid Vannoppen</name><affiliation wicri:level="1"><nlm:affiliation>University of Leuven, Division Forest, Nature and Landscape, Department of Earth and Environmental Sciences, Celestijnenlaan 200E, Box 2411, B-3001 Leuven, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>University of Leuven, Division Forest, Nature and Landscape, Department of Earth and Environmental Sciences, Celestijnenlaan 200E, Box 2411, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Beeckman, Hans" sort="Beeckman, Hans" uniqKey="Beeckman H" first="Hans" last="Beeckman">Hans Beeckman</name><affiliation wicri:level="1"><nlm:affiliation>Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Royal Museum for Central Africa, Wood Biology Service, Leuvensesteenweg 13, B-3080 Tervuren</wicri:regionArea><wicri:noRegion>B-3080 Tervuren</wicri:noRegion></affiliation></author><author><name sortKey="Van Acker, Joris" sort="Van Acker, Joris" uniqKey="Van Acker J" first="Joris" last="Van Acker">Joris Van Acker</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author><author><name sortKey="Van Den Bulcke, Jan" sort="Van Den Bulcke, Jan" uniqKey="Van Den Bulcke J" first="Jan" last="Van Den Bulcke">Jan Van Den Bulcke</name><affiliation wicri:level="4"><nlm:affiliation>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>UGCT-Woodlab-UGent, Ghent University, Laboratory of Wood Technology, Department of Forest and Water Management, Coupure Links 653, B- 9000 Gent</wicri:regionArea><orgName type="university">Université de Gand</orgName><placeName><settlement type="city">Gand</settlement><region>Région flamande</region><region type="district" nuts="2">Province de Flandre-Orientale</region></placeName></affiliation></author></analytic><series><title level="j">Annals of botany</title><idno type="eISSN">1095-8290</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Disentangling tree growth requires more than ring width data only. Densitometry is considered a valuable proxy, yet laborious wood sample preparation and lack of dedicated software limit the widespread use of density profiling for tree ring analysis. An X-ray computed tomography-based toolchain of tree increment cores is presented, which results in profile data sets suitable for visual exploration as well as density-based pattern matching.</div></front></TEI><affiliations><list><country><li>Belgique</li></country><region><li>Province de Flandre-Orientale</li><li>Région flamande</li></region><settlement><li>Gand</li></settlement><orgName><li>Université de Gand</li></orgName></list><tree><country name="Belgique"><region name="Région flamande"><name sortKey="De Mil, Tom" sort="De Mil, Tom" uniqKey="De Mil T" first="Tom" last="De Mil">Tom De Mil</name></region><name sortKey="Beeckman, Hans" sort="Beeckman, Hans" uniqKey="Beeckman H" first="Hans" last="Beeckman">Hans Beeckman</name><name sortKey="Van Acker, Joris" sort="Van Acker, Joris" uniqKey="Van Acker J" first="Joris" last="Van Acker">Joris Van Acker</name><name sortKey="Van Den Bulcke, Jan" sort="Van Den Bulcke, Jan" uniqKey="Van Den Bulcke J" first="Jan" last="Van Den Bulcke">Jan Van Den Bulcke</name><name sortKey="Vannoppen, Astrid" sort="Vannoppen, Astrid" uniqKey="Vannoppen A" first="Astrid" last="Vannoppen">Astrid Vannoppen</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/CheneBelgiqueV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000017 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000017 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= CheneBelgiqueV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:27107414
|texte= A field-to-desktop toolchain for X-ray CT densitometry enables tree ring analysis.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:27107414" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a CheneBelgiqueV1
| This area was generated with Dilib version V0.6.27. |  |